LOC_Os04g50060

Expression Profile

RGAP LOCUS ID LOC_Os04g50060
RAP-DB ID Os04g0590400
Function GRAS family transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 2.206

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Cytoplasm
score 55
confidence value 0.25
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGRAS23
Function assigned as per literature OsGRAS23 is involved in drought stress response through regulating expression of stress-responsive genes
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 26067440
Reference of localization https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-015-0532-3
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os04g50060.1 protein
MLDSGSYDDVDYGDLFSIPNPPAPHLLNFPLQFFPSNGFISSADDSHRSPAGMFGSTPSPTSTTTELENSEDLSESADDAVLAYINQFLLEDEEDESCPG
TITSVEDSALLAVEKPFVDILTASQEACQENSWIDSCCDFTGNGGLLDTFTTTHAACQPAPCEFEKEKGECAVHKGRKNPHDDCLLFEEESRRSKQLAVS
EEETVREMFDKVLLCNGECELRAPLPAEARNCGVYVKGSGNKRGRKKGKSGASAEDDAVDLTTLLIHCAQAAAIDDHRNSNELLKQIRQRSSAYGDAGQR
LAHCFANALEARLAGTGSNIYRSLAAKRTSVYDILNAFKLYVTACPFKKISNFFSIEAILNASKGMTRLHIVDYGIQYGFQWPIFFQRISKRPGGPPSVR
ITGVDLPQPGFRPAQLIEATGRRLHDYARMFNVPFEYHAIAAKWDTIRVEDLKIDKDKDELLVVNCLFRMRNMMDEMVTDDSPRMQVLKTIRKMNPNLFI
HGVVNGTYNAPFFVTRFKEALFYYSSLFDMLETTASRVDENRLLIERDLFGREALNVVACEGTERVERPETYKQWQVRNIRAGFKQLPLNQETVKKARYK
VKKSYHRDFLVDEDNKWMLQGWKGRIIFALSAWEPN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Biological Process
GO Term biological_process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES