LOC_Os04g49570

Expression Profile

RGAP LOCUS ID LOC_Os04g49570
RAP-DB ID Os04g0585200
Function glutamate receptor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 4.656

3) NUCPRED Prediction
localization Non Nuclear
score 0.42

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.78
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GLR3.1
Function assigned as per literature rice GLR3.1, is essential for the maintenance of cell division and individual cell survival in the root apical meristem at the early seedling stage
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment human HEK293 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 16377757
Reference of localization http://www.plantcell.org/content/18/2/340.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.085
NLS score -0.47
Protein Sequence >LOC_Os04g49570.2 protein
MKFIFYLFSIFCCLCSCAQSQNISGRPDAVRIGAQFARNSTIGRVAAVAVLAAVNDINNDSNILPGTKLDLHMHDSSCNRFLGIVQALQFMEKDTVAIIG
PLSSTTAHVLSHLANELHVPLMSFSATDPTLSSLEYPFFVRTTVSDQFQMTAVADLVEYYGWKQVTTIFVDNDYGRNAISSLGDELSKRRSKILYKAPFR
PGASNNEIADVLIKVAMMESRVIILHANPDSGLVVFQQALKLGMVSNGYAWIATDWLTSYLDPSVHLDIGLLSTMQGVLTLRHHTENTRRKSMLSSKWSE
LLKEDSGHSRFLLSTYGLYAYDTVWMLAHALDAFFNSGGNISFSPDPKLNEISGRGLNLEALSVFDGGQLLLEKIHQVDFLGATGPVKFDSGGNLIQPAY
DIVSIIGSGLRTVGYWSNYSGLSVISPETLYKKPANRTRETQKLHDVIWPGETINKPRGWVFPNNGNEIKIGVPDRVSYRQFVSVDSETGMVRGLCIDVF
VAAINLLAYPVPYRFVPFGNNRENPSYSELINKIITDDFDAVVGDVTIITNRTKVVDFTQPYVSSGLVVLTSVKRQNSGGWAFLQPFTIKMWTVTGLFFL
IIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLFFAHREDTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVPIGFQ
VGSFAENYLAQELGVAHSRLKALGSPEEYKKALDLGPSKGGVAAIVDERPYIELFLYQNPKFAVVGSEFTKSGWGFAFPRDSPLSVDLSTAILELSENGD
LQRIHDKWLASDMSSMSQASELDQDPDRLDVYSFSALFLICGLACIFALAIHACNLFYQYSRHAAEEDPAALQPSASDGSRSLSRRSKLQSFLSFADRRE
ADIRRAAKEKASGLGGSGGSMSGVSFTSSGSGSTTASC

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term response to endogenous stimulus
7
GO Category Molecular Function
GO Term receptor activity
8
GO Category Molecular Function
GO Term signal transducer activity
9
GO Category Biological Process
GO Term tropism
10
GO Category Molecular Function
GO Term transporter activity
11
GO Category Biological Process
GO Term cellular homeostasis
Presence of Splice variants YES