| RGAP LOCUS ID |
LOC_Os04g49130 |
| RAP-DB ID |
Os04g0580400 |
| Function |
ubiquitin-conjugating enzyme, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
mito |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.269 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.31 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
6 |
| confidence value |
0.07 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSCE3 |
| Function assigned as per literature |
OsSCE3 enhances drought stress tolerance in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
epidermal cells in the root tissues |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
31212102 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0176161719300914?via%3Dihub |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.125 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g49130.1 protein
MASGGGIARARLAEERKAWRKNHPHGFVAKPETLPDGSVNLMVWRCIIPGKEGTDWEGGYFPLTMQFTEDYPTNAPSCKFPSGFFHINVYDSGAVCLSIL
STAWKPSITVRQILIGIQELFDDPNPNSAAQNISYELYRKDMEEYRKRVRQQAKKYPSAL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| Presence of Splice variants |
YES |
