| RGAP LOCUS ID |
LOC_Os04g48260 |
| RAP-DB ID |
Os04g0571200 |
| Function |
zinc RING finger protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.348 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.16 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
91.66 |
| confidence value |
0.81 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSIRH2-14 |
| Function assigned as per literature |
OsSIRH2-14 is a RING E3 ligase that positively regulates the salinity stress response by modulating the stability of salt-related proteins |
| Subcellular localization as per literature |
Cytoplasm , Golgi, and Plasma membrane |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
31325169 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.13619 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.094 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g48260.1 protein
MEVMHDTTGKKEVVVCYMNAPLPYMIEENYGGCFFEDDVDLAQVLQDQEIVYQLIQGNYGTGSSKTHSNPSSSYSHGCELGERKPSGVASYEAQLVVDEA
LARELQQMEDQLASASIDDHNIIEHGRKPIASSTSSGGNASASRPPQVVMEDGIDPDNMTYEELQQLGEAIGTESKGLPEDVIALLPTSTYKIRIFSRKE
KHDECVICCMTYKNRDRLTKLPCEHQYHQTCVTKWLKINKVCPVCNKEVYGSGK |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
growth |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| Presence of Splice variants |
No |
