LOC_Os04g47860

Expression Profile

RGAP LOCUS ID

LOC_Os04g47860

RAP-DB ID

Os04g0566400

Function

ZOS4-11 - C2H2 zinc finger protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

10.5

2) CELLO Prediction

localization

Nuclear

score

4.308

3) NUCPRED Prediction

localization

Nuclear

score

0.82

4) Y-Loc Prediction

localization

Nuclear

score

99.17

confidence value

0.46

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

C2H2

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsIDD10

Function assigned as per literature

IDD10 functions in regulatory circuits that control the expres-sion of N-responsive genes

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

Seminal root of IDD10-GFP transgenic plants

NUCLEAR or Not Nuclear

NUCLEAR

PMID

23278238

Reference of localization

https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/nph.12075

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.101

NLS score

1.02

Protein Sequence

>LOC_Os04g47860.2 protein
MASNSSAAAAAAFFGISRDGDQHDQIKPLISHQQHQHQQQQLAASLTGVATAAPTAASSQGAPPAAPPAKKKRNLPADPDAEVIALSPKTLLATNRFVCE
VCNKGFQREQNLQLHRRGHNLPWKLKQKNPAQAQRRRVYLCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTRE
YRCDCGTLFSRRDSFITHRAFCDALAQESSRLPPTSLSSLTSHLYGASNAGNMALSLSQVGSHLTTSLQDGGGHHHHPSPELLRLGGAGGGGGAGGGSSI
AARLDHLLSPSGASAFRPPQPAFFLNAAAAAAATGQDFGDDAGNGQHSFLQAKPFHGLMQLPDLQGNGAGGPGAPGPNLFNLGFFANNGNSSGSSHEHAS
QGLMSNDQFSCGAGGGGGLTRRRRGSPAVTSLVATMFLLQGSTTIKRRCCRRCRRPALLQKAAQMGATSSANGPGSMFRGFVGSSPHMRPAAQHMDQSDA
HLNDLMNSLAGGGVNAAAMFGGTNGGGVPGAGMFDPRLCDIEHEVKFSQGGGGGGGAGAGTGDGTRDFLGVGGGGIVHGMSTPRGDHHQSSSDMSSLEAE
MKSASSFNGRRMP

GO Analysis

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	binding

GO Category	Cellular comBiological Processonent
GO Term	intracellular

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

GO Category	Molecular Function
GO Term	nucleic acid binding

GO Category	Cellular comBiological Processonent
GO Term	plastid

Presence of Splice variants

YES