LOC_Os04g46940

Expression Profile

RGAP LOCUS ID LOC_Os04g46940
RAP-DB ID Os04g0556000
Function copper-transporting ATPase 3, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 14

2) CELLO Prediction
localization PlasmaMembrane
score 1.564

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.28
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHMA5
Function assigned as per literature OsHMA5 is involved in the xylem loading of Copper (Cu) at both the vegetative and reproductive growth stages
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice roots
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24064929
Reference of localization http://www.plantphysiol.org/content/163/3/1353.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.101
NLS score 1.05
Protein Sequence >LOC_Os04g46940.1 protein
MAASTRALFLSCFHGSGGGGGTSEVSRRLVLRPRYPSMPRRPRSAAVAGEGGEGGGGGGDGDLEAAAVGAEEEEKVAVFEVSGMTCAACAGSVEKAVKRL
QGIHDAAVDVLGGRAQVVFYPAFVSEEKIRETIQDVGFEAKLIDEEVKEKNILVCRLHIKGMTCTSCASTVESILQVVPGVQRASVALATEEAEIRYDRR
IVTASQLTHAVEETGFEAILITTGDDQSRIDLKVDGTLNERSIMIVKSSVQALPGVEDIKVDPELHKITISYKPDQTGPRDLIEVIESAASGDLTVSIYP
EADGRQQHRHGEIKRYRQSFLWSLVFTIPVFLTSMVFMYIPGLKDGLEKKVINMMSIGELLRWILSTPVQFVIGRRFYTGAYKALSHGSSNMDVLIALGT
NTAYFYSVYSILRAASSHNYMATDFFETSSMLISFILLGKYLEILAKGKTSEAIAKLMDLAPETATMLIYDHEGNVVGEKEIDSRLIQKNDVIKVVPGGK
VASDGFVIWGQSHVNESMITGESRPVAKRKGDTVIGGTVNENGVLHVRATFVGSESALAQIVRLVESAQMAKAPVQKFADQISRVFVPLVIILSLLTWLA
WFLAGRLHGYPNSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVATGVGASQGVLIKGGQALESAQKVDCIVFDKTGTLTIGKPVVVNTRLLK
NMVLREFYAYVAAAEVNSEHPLGKAVVEHAKKFHSEESHVWTEARDFISVTGHGVKAKISGRAVMVGNKSFMLTSGIDIPVEALEILTEEEEKAQTAIIV
AMDQEVVGIISVSDPIKPNAREVISYLKSMKVESIMVTGDNWGTANAISKEVGIENTVAEAKPEQKAEKVKELQSAGRTVAMVGDGINDSPALVSADVGL
AIGAGTDVAIEAADIVLMKSNLEDVITAIDLSRKTFFRIRMNYVWALGYNIIGIPIAAGVLFPSTRFRLPPWVAGAAMAASSVSVVCWSLLLRYYKSPKL
GR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Biological Process
GO Term transport
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No