LOC_Os04g46860

Expression Profile

RGAP LOCUS ID LOC_Os04g46860
RAP-DB ID Os04g0555000
Function scarecrow, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.448

3) NUCPRED Prediction
localization Non Nuclear
score 0.54

4) Y-Loc Prediction
localization Nuclear
score 54.1
confidence value 0.32
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSCL6-IIc
Function assigned as per literature OsHAM3 regulates phase change in rice
Subcellular localization as per literature Predominately in the nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26023934
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0125833#sec025
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.06
NLS score -0.47
Protein Sequence >LOC_Os04g46860.1 protein
MRAAPFSADGNGAAELAGSIAALLWPEDKGGGGGGGGGSLLVEPRSVLDCRGSPSPPNSTSTLSSSHGSGAADSISTGVAAVSESSAAAAEATRWAAPGE
HGGGGGGELPPIPGALDVGFVAEESWDAMLGDAAAAAGQEQTFLNWIMAAPGDMEPQAPGLSQQQLLANAAGFGFPLQHHPGGVSSPAALASDLSSSGGR
SLTSSSGSNSKATSAFGLLSPEAALQPPPATTAPFHNGADMKPPLLGLPSPTLLLNQHQPTPASTLFMPFPSFSDHQQQPLLQPPPKRHHSVPDNLFLLH
NQPQPPPPAPAQCLPFPTLHSAVPFQLQPSMQHPRNAMKSTAAAAAAQQQHLLDELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDAL
LLALADGHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFANFTVTQALLDEIASTTASCIRVIDFDLGVGGQWASFLQELAHRCGSGGVSLPMLKLTAFV
SAASHHPLELHLTQDNLSQFAADLGIPFEFNAINLDAFDPMELIAPTADEVVAVSLPVGCSARTPLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFL
NCLQSCLCLLESLDAAGTDADAVSKIERFLIQPRVEDAVLGRRRADKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQR
GELVSVSAWRC

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term cell differentiation
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cell growth
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Biological Process
GO Term cellular process
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
12
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No