LOC_Os04g46450

Expression Profile

RGAP LOCUS ID LOC_Os04g46450
RAP-DB ID Os04g0550400
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.559

3) NUCPRED Prediction
localization Nuclear
score 0.95

4) Y-Loc Prediction
localization Nuclear
score 99.54
confidence value 0.85
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHUB1|MIP1
Function assigned as per literature OsHUB1 mediates histone H2B monoubiquitination that is an important epigenetic modification t and modulates transcriptional regulation of anther development in rice
Subcellular localization as per literature Nucleus, dimer of OsHUB1 and heteromer of OsHUB1 and OsHUB2
Cells used for localization experiment Leaves of Nicotiana benthamiana
NUCLEAR or Not Nuclear NUCLEAR
PMID 26143250
Reference of localization http://www.plantphysiol.org/content/168/4/1389.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.156
NLS score 0.27
Protein Sequence >LOC_Os04g46450.1 protein
MGSTGEPDRKRRLSSSVAPGGGAPVSPAKRLAVAPTSEDKKLDFTVLKYKNQKLSEQLEAHKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADL
KSRSFCKSGSPNSSPGSGHNNVQKDGTCAPIERDTLRSLVESGATESSGCLPGCHLGSDAPPLHLSTANALGDIFFPSSDLLQANEECALAALTKLPEND
RSKQLQSTSSNLLSSLNNVVQALSNLQLKHKQLAEDYQNQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRDNTQGARIPYPTLGNKNMPED
KVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEILNKIATFQNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQ
FNLKVDLAEIPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMTKHKEASLELNSLRAEVHSLSRI
LSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRL
ATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQ
ESSLMDLYNQKIVSLEDQLKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMS
RKASSLRAKARESAVLEKLRHEVKEYRGILKCGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIYI

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to biotic stimulus
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term anatomical structure morphogenesis
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Biological Process
GO Term cell growth
10
GO Category Biological Process
GO Term reproduction
11
GO Category Biological Process
GO Term post-embryonic development
12
GO Category Molecular Function
GO Term catalytic activity
13
GO Category Biological Process
GO Term cell cycle
14
GO Category Biological Process
GO Term cellular process
15
GO Category Molecular Function
GO Term binding
16
GO Category Cellular comBiological Processonent
GO Term mitochondrion
Presence of Splice variants No