LOC_Os04g46390

Expression Profile

RGAP LOCUS ID LOC_Os04g46390
RAP-DB ID Os04g0549600
Function chaperone protein dnaJ, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 3.626

3) NUCPRED Prediction
localization Non Nuclear
score 0.56

4) Y-Loc Prediction
localization Nuclear
score 91.73
confidence value 0.61
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDjA6
Function assigned as per literature OsDjA6 negatively regulates rice innate immunity, probably via the ubiquitination proteasome degradation pathway
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 28220688
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/mpp.12546
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.149
NLS score 0.45
Protein Sequence >LOC_Os04g46390.2 protein
MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGG
GAFGGSSSRVRRQRRGEDVAHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIIS
DRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIK
ANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAY
DEDEEEDAPRVQCAQQ

GO Analysis
1
GO Category Biological Process
GO Term protein metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Cellular comBiological Processonent
GO Term cellular_component
5
GO Category Molecular Function
GO Term protein binding
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Biological Process
GO Term flower development
9
GO Category Cellular comBiological Processonent
GO Term cell wall
10
GO Category Cellular comBiological Processonent
GO Term nucleolus
11
GO Category Cellular comBiological Processonent
GO Term cytosol
12
GO Category Biological Process
GO Term response to stress
13
GO Category Biological Process
GO Term response to abiotic stimulus
14
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES