LOC_Os04g46220

Expression Profile

RGAP LOCUS ID LOC_Os04g46220
RAP-DB ID Os04g0546800
Function ethylene-responsive transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.205

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsERF1
Function assigned as per literature OsERF1 is involved in ethylene response
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion peel cells and root tip cells of transgenic Arabidopsis
NUCLEAR or Not Nuclear NUCLEAR
PMID 18313797
Reference of localization https://www.sciencedirect.com/science/article/pii/S0176161707003380?via%3Dihub#fig2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.094
NLS score 0.84
Protein Sequence >LOC_Os04g46220.1 protein
MTARSMLRNHPEASVLDTIRQHLLEEPRGGGGGEAAEASFGSLVADMWSDSLPFRDDDADDMVVFGAMRDAFSCGWLPDGVFAEVKPEPLLSPDSSSYDG
SSCCFGFADVSEPVTPSDAASGAAEAAAAAAAATAEHGKEEEAAAAVARGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDTAEDAALAYDRAAYRM
RGSRALLNFPLRIGSEIAAAAAAAAAAAAGDKRPSPEPATSESSFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAASMSMPLVPPPSQLNWPVQAWYPA
AAPVEQVAITPRVEQLVI

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term nuclear envelope
4
GO Category Biological Process
GO Term biological_process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No