LOC_Os04g45750

Expression Profile

RGAP LOCUS ID LOC_Os04g45750
RAP-DB ID Os04g0541100
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13.5

2) CELLO Prediction
localization Nuclear
score 3.957

3) NUCPRED Prediction
localization Nuclear
score 0.86

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.81
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Trihelix

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GT-2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score 0.28
Protein Sequence >LOC_Os04g45750.1 protein
MHAFAPPVPAPPPMSAMPPPPGPIQPAPISSAAPAVPLELPPQPPINLQGLSFSSMSGSESDDESEDDEMTAETGGSQDRLGKRKRGAGGKRLATFFEGL
IKQVVDRQEEMQRRFLETMEKREAERTAREEAWRRQEVARLNREQEQLAQERAAAASRDAAIISFLQRIGGQSVQVPPAATVIQMPTPVQLQTPPPVKQP
ARQHQPQPTPPPPQAAPIPAAPLQQQPPQPQHKETIHHEAVTPRRAPPTSGSSLELVPAAEQHVESGLGGGEGGSASSSRWPKTEVQALIQLRMELDMRY
QETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDVIYRRKHLTGGGGGGASAANVAATAIEHQNPNRHEI
EGKNINDNDKRKNGGGGGAQVPTSNGDTAPTTATFDVDSGMKKPEDIVRELSEQPPREFTTDETDSDDMGDDYTDDGEEGEDDGKMQYRIQFQRPNPGGA
NTAPPPATTPASAVPTSTPTSTFLAMVQ

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES