LOC_Os04g44870

Expression Profile

RGAP LOCUS ID LOC_Os04g44870
RAP-DB ID Os04g0531100
Function C2 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Nuclear
score 1.594

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Cytoplasm
score 88
confidence value 0.59
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Rpp16|OsPBP1
Function assigned as per literature OsPBP1 is required for pollen fertility in rice
Subcellular localization as per literature Cytoplasm and nucleus
Cells used for localization experiment Onion epidermal cells and root cells of the transgenic plants
NUCLEAR or Not Nuclear NUCLEAR
PMID 19825580
Reference of localization https://www.cell.com/molecular-plant/fulltext/S1674-2052(14)60354-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1674205214603543%3Fshowall%3Dtrue
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os04g44870.1 protein
MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSVTHNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIP
PTVYNVVKEEEYRGEIKVGLTFTPEDDRDRGLSEEDIGGWKQSS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No