LOC_Os04g44620

Expression Profile

RGAP LOCUS ID LOC_Os04g44620
RAP-DB ID Os04g0528400
Function hus1-like protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Extracellular
score 1.483

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.12
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHUS1
Function assigned as per literature OsHUS1 facilitates accurate meiotic recombination in rice
Subcellular localization as per literature Meiotic chromosomes
Cells used for localization experiment Pollen mother cells (PMCs)
NUCLEAR or Not Nuclear NUCLEAR
PMID 24901798
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004405
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.47
Protein Sequence >LOC_Os04g44620.2 protein
MKFKAFFTDDGIALLDKRFLPAMDKVGRLCHVYLTPTHAMLLHNLLGPTGTGPDGGGPQCVAQFAKDLLFREYSVSSRNGNRVAFAVDVALLHRALRSAL
AVHAQSPAAGDASAAIQVKLVNKLPAGSRSASPFLTFETKGARSAVVQDVPISRPLSRSDVERLQAALDSAQELPQTLVQVPDLPQLQSLVDRLKNVGDL
LTVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMAIERGEALSVQVNMKHLAKSLQCHLAKPDCTFYGISPGGACLTVIFQ
YFIPGTRLTDKSISFYCRLPVLDPGS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES