LOC_Os04g43200

Expression Profile

RGAP LOCUS ID LOC_Os04g43200
RAP-DB ID Os04g0511200
Function caleosin related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Cytoplasmic
score 1.926

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Cytoplasm
score 54
confidence value 0.16
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) EFA27
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os04g43200.1 protein
MAEEAASKAAPTDALSSVAAEAPVTRERPVRADLEVQIPKPYLARALVAPDVYHPEGTEGRDHRQMSVLQQHVAFFDLDGDGIVYPWETYGGLRELGFNV
IVSFFLAIAINVGLSYPTLPSWIPSLLFPIHIKNIHRAKHGSDSSTYDNEGRFMPVNFESIFSKNARTAPDKLTFGDIWRMTEGQRVALDLLGRIASKGE
WILLYVLAKDEEGFLRKEAVRRCFDGSLFESIAQQRREAHEKQK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Cellular comBiological Processonent
GO Term vacuole
9
GO Category Biological Process
GO Term lipid metabolic process
10
GO Category Biological Process
GO Term biological_process
11
GO Category Molecular Function
GO Term binding
12
GO Category Cellular comBiological Processonent
GO Term membrane
13
GO Category Cellular comBiological Processonent
GO Term plastid
14
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES