| RGAP LOCUS ID |
LOC_Os04g43070 |
| RAP-DB ID |
Os04g0509600 |
| Function |
ammonium transporter protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
5 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
4.55 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.79 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsAMT1;1|OsAMT1.1 |
| Function assigned as per literature |
OsAMT1;1 has the potential for improving nitrogen use efficiency, plant growth, and grain yield under both suboptimal and optimal nitrogen fertilizer conditions |
| Subcellular localization as per literature |
Plasma membrane |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24420570 |
| Reference of localization |
https://academic.oup.com/jxb/article/65/4/965/498205 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.056 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g43070.1 protein
MATCAADLAPLLGPVAANATDYLCNRFADTTSAVDATYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSNGF
IGKQFFGLKHMPQTGFDYDFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGPLLFGSGVIDFAGSGVVHM
VGGVAGLWGALIEGPRIGRFDHAGRSVALKGHSASLVVLGTFLLWFGWYGFNPGSFTTILKTYGPAGGINGQWSGVGRTAVTTTLAGSVAALTTLFGKRL
QTGHWNVVDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGILFTALFARQKYVEEIYGAGRPYGLFM
GGGGKLLAAHVIQILVIFGWVSCTMGPLFYGLKKLGLLRISAEDETSGMDLTRHGGFAYVYHDEDEHDKSGVGGFMLRSAQTRVEPAAAAASNSNNQV |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 12 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
No |
