LOC_Os04g42000

Expression Profile

RGAP LOCUS ID LOC_Os04g42000
RAP-DB ID Os04g0497400
Function 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 3.538

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Chloroplast
score 1
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLS
Function assigned as per literature OsLS has role in defense responses.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment transgenic tobacco (LSETT) lines
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20465413
Reference of localization https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-100-6-0573
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.086
NLS score -0.47
Protein Sequence >LOC_Os04g42000.1 protein
MAAAAPATTSSAAARPSSSSSSSRQSDAPLRAATVSFPYSPRPAALAAGARASRVSPVVVAAGGGHQRLMGSLTNTQGLRFGVVVARFNEIVTNLLLQGA
LETFERYSVKKENITVVSVPGSFEIPVAAQKLGKSGKFDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLSAEIPCIFGVLTCDDMDQALNRAGGKAGN
KGAEAALTAIEMASLFQHHLA

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No