LOC_Os04g41970

Expression Profile

RGAP LOCUS ID LOC_Os04g41970
RAP-DB ID Os04g0497200
Function endoglucanase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Vacuole
score 1.129

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.28
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGLU3|RT
Function assigned as per literature OsGLU3 is required for root cell elongation and division in rice
Subcellular localization as per literature Plasma membrane and endosomes
Cells used for localization experiment Transgenic rice seedlings
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21976713
Reference of localization https://www.cell.com/action/showPdf?pii=S1674-2052%2814%2960656-0
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 3
Number of Bipartite 2
Basic residues % 0.108
NLS score 2.05
Protein Sequence >LOC_Os04g41970.1 protein
MYSANHWGGSFEIAADGAAEDDHSRNMDLDRGALSARQHQLDETQQSWLLGPPEAKKKDKYVDLGCVVVKRKLLWWVLWTLLAAFILIGLPVIIAKSIPK
KKPHAPPPDQYTDALHKALLFFNAQKSGRLPKNNGIKWRGNSGLSDGSDLTDVKGGLVGGYYDAGDNIKFHFPLAFSMTMLSWSVIEYSAKYKAVGEYDH
VRELIKWGTDYLLLTFNSSASTIDKVYSQVGIAKINGTQPDDHYCWNRPEDMAYPRPVQTAGSAPDLGGEMAAALAAASIVFRDNAAYSKKLVNGAAAVY
KFARSSGRRTPYSRGNQYIEYYYNSTSYWDEYMWSAAWMYYATGNNTYITFATDPRLPKNAKAFYSILDFSVFSWDNKLPGAELLLSRLRMFLNPGYPYE
ESLIGYHNTTSMNMCTYFPRFGAFNFTKGGLAQFNHGKGQPLQYTVANSFLAALYADYMESVNVPGWYCGPYFMTVDDLRSFARSQVNYILGDNPKKMSY
VVGYGKKYPRRLHHRGASTPHNGIKYSCTGGYKWRDTKGADPNVLVGAMVGGPDKNDQFKDARLTYAQNEPTLVGNAGLVAALVALTNSGRGAGVTAVDK
NTMFSAVPPMFPATPPPPSKWKP

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term cell growth
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Molecular Function
GO Term hydrolase activity
10
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
11
GO Category Biological Process
GO Term response to endogenous stimulus
12
GO Category Biological Process
GO Term biosynthetic process
13
GO Category Biological Process
GO Term carbohydrate metabolic process
14
GO Category Biological Process
GO Term multicellular organismal development
15
GO Category Cellular comBiological Processonent
GO Term endosome
16
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No