LOC_Os04g41110

Expression Profile

RGAP LOCUS ID LOC_Os04g41110
RAP-DB ID Os04g0488100
Function Rad21 / Rec8 like protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization vacu
score 6

2) CELLO Prediction
localization Nuclear
score 4.345

3) NUCPRED Prediction
localization Nuclear
score 0.97

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.15
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAD21-2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.132
NLS score 2.1
Protein Sequence >LOC_Os04g41110.1 protein
MSCSKVLLSKKGVLGTVWVAAVSGVAALSRDQVVRTNVVACVDKILPDDNDKTTYRVLGLLLLGIVRIYSKKVEYLCHECNELLGSYGSAHCNELSIPTG
GATNRVSKQAKKPVRARRLVVRQEGAYKVKIPMQAVRTTRAETRATSQITEVRDTHATPDLPTFTIPKRFELDSFDLGIPEDRDDDDVDHHQLPHQGTML
EDENHHTSCLFESYKMMTCSYADLDSACIMPVRVTIPTEMMSVISEVNSLLCLSSIGGEPENHNAESACFTPVKDILPPEMVDMMAEVNDPSDKSTRGKK
PQRELNRDENGNSACHIPLSGSKEVQIPENIVENVTFPSRDANCPTIEESENGSLHGTNTNPSCDGFEEPGSLEQPTLRCKTKLINELSPSTPEPMTEGG
TGLPCSPKFMVTTPAKKEKHRVTRKRRRGLYNKDYIPTDRGDKRKVRRRGTWVLYDENIVLPNETLRNTIEDASDLVQQRRKAPHTCLYTWKEGKIRSLP
VTFMDPLILYPTSVYVRHTITADTPENSCRESVKSRRRLSLELSESNNICDDAKNVEGESIPDEPRKRKLDELTDSVQATVGCYTESAQYHNDEDYRFND
DTVKEKDFSIGGHESHSTELQERLNALKSKNPQLDEALDADIDSMEEDTHMDEQHARDEGLLRSTRTRTVARYFHQLLVDQKCQQRNNSVCLGQALEGTK
RKTSARFFYETLILKSGSLIEVNQEQTYGDIIVSATPRLEAALRSSEKQ

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term cell cycle
Presence of Splice variants YES