LOC_Os04g40950

Expression Profile

RGAP LOCUS ID LOC_Os04g40950
RAP-DB ID Os04g0486600
Function glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 14

2) CELLO Prediction
localization Cytoplasmic
score 4.331

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.07
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGapC2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.47
Protein Sequence >LOC_Os04g40950.1 protein
MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVES
TGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRG
GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAK
AGIALNDNFVKLVSWYDNEWGYSSRVVDLIRHMYNTQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term carbohydrate metabolic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term generation of precursor metabolites and energy
8
GO Category Biological Process
GO Term catabolic process
9
GO Category Biological Process
GO Term response to stress
10
GO Category Biological Process
GO Term response to biotic stimulus
11
GO Category Biological Process
GO Term metabolic process
12
GO Category Biological Process
GO Term biological_process
13
GO Category Cellular comBiological Processonent
GO Term cell wall
14
GO Category Cellular comBiological Processonent
GO Term nucleolus
15
GO Category Molecular Function
GO Term binding
16
GO Category Cellular comBiological Processonent
GO Term cytosol
17
GO Category Cellular comBiological Processonent
GO Term mitochondrion
18
GO Category Cellular comBiological Processonent
GO Term plasma membrane
19
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES