LOC_Os04g40930

Expression Profile

RGAP LOCUS ID LOC_Os04g40930
RAP-DB ID Os04g0486400
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.06

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Nuclear
score 99.43
confidence value 0.75
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category Trihelix

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) rml1|RML1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.132
NLS score 0.21
Protein Sequence >LOC_Os04g40930.1 protein
MLLSGPSPQQPTPPLLLPESSGEDGGHDSSSRAAASGGGGGPKKRAETWVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDK
WRNLLKEFKKARSHARGGGGGGVGGGGAGTGGGNCPAKMACYKEIDDLLKRRGKPTGGGGAAVGSGAVKSPTVTSKIDSYLQFDKGFEDASIPFGPVEAS
GRSLLSVEDRLEPDSHPLALTADAVATNGVNPWNWRDTSTNGGDNQVTFGGRVILVKWGDYTKRIGIDGTADAIKEAIKSAFGLRTRRAFWLEDEDEVVR
SLDRDMPVGTYTLHLDTGMTIKLYMFENDEVRTEDKTFYTEEDFRDFLSRRGWTLLREYSGYRIADTLDDLRPGVIYEGMRSLGD

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term DNA binding
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No