LOC_Os04g40290

Expression Profile

RGAP LOCUS ID LOC_Os04g40290
RAP-DB ID Os04g0479000
Function AAA-type ATPase family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Nuclear
score 1.387

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.12
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CRC1
Function assigned as per literature CRC1 is a novel synaptonemal complex component and essential for meiotic recombination initiation in rice
Subcellular localization as per literature chromosomes
Cells used for localization experiment Rice microsporocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 23943860
Reference of localization http://www.plantcell.org/content/25/8/2998.long#def-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.085
NLS score -0.47
Protein Sequence >LOC_Os04g40290.1 protein
MSAPMEVSFSAPPPPDAASAAAAAPSLVPAVSAAAVAATTVSCSPQPPTGSPSADDRILVSVEVLLHATSTARAEDVCAAVERMLEARSLSYVDGPVPIP
NDDPFLLANVKRIQICDTDEWTENHKVLLFWQVRPVVHVFQSRDFQRYILQLSEDGPGEEPGEDDTLSSFNEWALPAKEFDGLWESLLYEVGLKQRLLRY
AASALLFTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKSRYSMCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLID
EVESLAAARQAAISGSEPSDSIRVVNALLTQMDKLKSWPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLRVGILTHTQGGNS
LCLLSYFSLMENQHCPEVADPHGSVHLSGLLHKAAEICEGLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQTAQRELSESRG

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No