LOC_Os04g39980

Expression Profile

RGAP LOCUS ID LOC_Os04g39980
RAP-DB ID Os04g0475600
Function gibberellin 20 oxidase 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Cytoplasmic
score 1.604

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Cytoplasm
score 74
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DAO
Function assigned as per literature DAO has role in auxin catabolism and maintenance of auxin homeostasis central to plant reproductive development.
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment rice protoplast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24094741
Reference of localization https://www.cell.com/developmental-cell/fulltext/S1534-5807(13)00513-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1534580713005133%3Fshowall%3Dtrue
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.103
NLS score 0.22
Protein Sequence >LOC_Os04g39980.1 protein
MVEIPAIDLRLAGGGGGAEETARLRDACARLGCFRVSGHGVPPGLQAEMKAAVRALFDLPDDAKRRNADIIPGSGYVPPGTANPLYEAFGLCDAAAPADV
DAFCARLDAPPHVRETVKAYAERMHSLIVDVAGKVAASLGLHGASFQDWPCQFRMNRYNYTQDSVGSPGVQVHTDSGFLTVLQEDECVGGLEVLDPAAGE
FVPVDPLPGSFVVNVGDVGQAWSNGRLHNVKHRVQCVAAVPRVSIAMFLLAPKDDTVSAPGELVDGEHPRRYREFKYDDYRRLRLSTGERAGEALARLAA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No