LOC_Os04g39970

Expression Profile

RGAP LOCUS ID LOC_Os04g39970
RAP-DB ID Os04g0475500
Function vacuolar sorting protein 9 domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 1.255

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Nuclear
score 63.16
confidence value 0.18
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsV4
Function assigned as per literature OsV4 plays an important role during early chloroplast development under cold stress in rice
Subcellular localization as per literature chloroplast
Cells used for localization experiment tobacco cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24289830
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.12138
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.158
NLS score -0.04
Protein Sequence >LOC_Os04g39970.1 protein
MRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTV
LASKGLRSEVDKVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESLGEMGLSADIKLEAQNDYGDLDFLDEE
EMIDTLEQKSIWRGSSLIAENRRARISS

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
Presence of Splice variants No