| RGAP LOCUS ID |
LOC_Os04g38940 |
| RAP-DB ID |
Os04g0463400 |
| Function |
integral membrane protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
4.5 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
2.229 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.02 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
59.31 |
| confidence value |
0.29 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsVIT1 |
| Function assigned as per literature |
OsVIT1 is a vacuolar Fe and Zn transporter and modulates Fe and Zn allocation between source and sink tissues |
| Subcellular localization as per literature |
Tonoplast |
| Cells used for localization experiment |
Arabidopsis protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
22731699 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2012.05088.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.071 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g38940.1 protein
MAAATDGGGLPLLADKAASHSHHHHPERHFTSGEVVRDVIMGVSDGLTVPFALAAGLSGASAPSSLVLTAGLAEVAAGAISMGLGGYLAAKSEADHYQRE
MKREQEEIIAVPDTEAAEIGEIMSQYGLEPHEYGPVVDGLRRNPQAWLDFMMRFELGLEKPDPKRAIQSALTIALSYVIGGLVPLLPYMFISTAQNAMLT
SVGVTLVALLFFGYIKGRFTGNRPFLSAVQTAIIGALASAAAYGMAKAVQTR |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular homeostasis |
|
| Presence of Splice variants |
YES |
