LOC_Os04g38520

Expression Profile

RGAP LOCUS ID LOC_Os04g38520
RAP-DB ID Os04g0458200
Function CPuORF18 - conserved peptide uORF-containing transcript, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Extracellular
score 2.773

3) NUCPRED Prediction
localization Non Nuclear
score 0.36

4) Y-Loc Prediction
localization Cytoplasm
score 81
confidence value 0.4
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) IIP4
Function assigned as per literature uncharacterized protein that may be dounstream target of ILA1
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 22207574
Reference of localization http://www.plantcell.org/content/23/12/4334
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.04
Protein Sequence >LOC_Os04g38520.1 protein
MDNSFVDIPNQPPMNNPFVLMEPSAQSYMVNLGKSTPHMDCLGSAMANYGHGNQNIQCIDSITTRDDGCRLVLGLGPTPNFYSAECQPTGVDKLKEAPSL
SGQGLTITDPGTLRLGLQMDVSQTIQPLQAPDGTVHSFTVVDEASASPSVRSIGGYMPSLLFAPRSGSSAVNETHEAETQDSLDLTHSDNDNTQHVQHHL
QLSPEPSAMTDTSFGVSSDVVTATTTSEQRNHPRHPKKCRFKGCSKGARGASGLCIAHGGGQRCHKPGCHKGAESSTAYCKAHGGGRRCEELGCTKSAEG
KTDYCIAHGGGRRCEHDGCPKAARGKSGRCIKHGGGKRCTVQGCIRSAEGKAGLCISHGGGRRCQFPDCSKGAQGSTLYCKGHGGGKRCIFDGCSKGAEG
STPLCKAHGGGKRCMFEGGGVCPKSVHGGTEYCVAHGGGKRCSVAGCTKSARGRTDCCVKHGGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTWGTGCEK
FARGRSGLCAAHGTLAAKQQERDAANNGAGMIPPGLFSGIVTVAATSSMTNEYSSSGISTASDCDGTVRSQAMMIPPQVLVPRSMMPSSSSEPTVHGGRE
GGCAVPEGRVHGGGLLSLLGGSFRNADMDKL

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
Presence of Splice variants No