LOC_Os04g37920

Expression Profile

RGAP LOCUS ID LOC_Os04g37920
RAP-DB ID Os04g0452100
Function FAD binding domain of DNA photolyase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Cytoplasmic
score 1.373

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Cytoplasm
score 91
confidence value 0.76
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCRY1b
Function assigned as per literature OsCRY1b isinvolved in blue-light inhibition of coleoptile and leaf elongation during early seedling development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 16805731
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2006.02753.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.103
NLS score -0.47
Protein Sequence >LOC_Os04g37920.1 protein
MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVA
LLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPS
DDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR
SIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDAD
LESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMW
QLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQMVPTMTSSLNRAETEISADFMNSVDSRAEVPTRVNFEPRTER
EENFRTTAGNVARTNGIHEHNNFQQPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADISSRSYLDRHPQSHRLMNWSQLSQSL
TTGREVENSMQPNWIG

GO Analysis
1
GO Category Molecular Function
GO Term receptor activity
2
GO Category Molecular Function
GO Term signal transducer activity
3
GO Category Biological Process
GO Term cell death
4
GO Category Biological Process
GO Term response to external stimulus
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term response to stress
7
GO Category Molecular Function
GO Term nucleotide binding
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term metabolic process
10
GO Category Biological Process
GO Term signal transduction
11
GO Category Biological Process
GO Term post-embryonic development
12
GO Category Cellular comBiological Processonent
GO Term cytoplasm
13
GO Category Molecular Function
GO Term protein binding
14
GO Category Molecular Function
GO Term kinase activity
15
GO Category Biological Process
GO Term biological_process
16
GO Category Cellular comBiological Processonent
GO Term nucleus
17
GO Category Biological Process
GO Term protein modification process
18
GO Category Biological Process
GO Term multicellular organismal development
19
GO Category Biological Process
GO Term growth
20
GO Category Biological Process
GO Term cellular homeostasis
21
GO Category Biological Process
GO Term secondary metabolic process
22
GO Category Biological Process
GO Term anatomical structure morphogenesis
23
GO Category Biological Process
GO Term cellular component organization
24
GO Category Biological Process
GO Term cell growth
Presence of Splice variants YES