LOC_Os04g34460

Expression Profile

RGAP LOCUS ID LOC_Os04g34460
RAP-DB ID Os04g0422000
Function PAP fibrillin family domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 2.034

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.63
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFBN5
Function assigned as per literature Fibrillin5 functions in the plastoquinone-9 biosynthetic pathway in rice
Subcellular localization as per literature Chloroplasts when interacts with OsSPS2
Cells used for localization experiment Maize mesophyll protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28751900
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01197/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.133
NLS score 0.55
Protein Sequence >LOC_Os04g34460.1 protein
MAAASVLLLLPSPFLRPSSPAHRARCGIATTTTTSTSGRRGLFLFASRCRPGPRRRAASAAVPPEHGLSQPQPQARAVGSYEAALGDAKDALYAALEGMN
RGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYSTISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLT
IEASYKITTKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKANIFVLERADPSEV

GO Analysis
1
GO Category Molecular Function
GO Term structural molecule activity
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No