LOC_Os04g33780

Expression Profile

RGAP LOCUS ID LOC_Os04g33780
RAP-DB ID Os04g0414100
Function OTU-like cysteine protease family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.763

3) NUCPRED Prediction
localization Nuclear
score 0.9

4) Y-Loc Prediction
localization Nuclear
score 99.48
confidence value 0.72
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsOTLD1
Function assigned as per literature OsOTDL1 is involved in histone monoubiquitination in the fine-turning of ABA signaling and drought response via balancing H2Bub1 deposition and removal.
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30578854
Reference of localization https://www.cell.com/molecular-plant/fulltext/S1674-2052(18)30372-1?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1674205218303721%3Fshowall%3Dtrue
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score 0.15
Protein Sequence >LOC_Os04g33780.1 protein
MTRIFVQRGAAGSSSSSSRSGSQTLQQQQQLQATSAVAREEELPPQPHQHPSELTASDNITDHLVEDADNSSNSNKPLGLDDPTSESSSSAEERAVMEKP
PKDDSSVIDPAFLVEELTGLQFSDQFEQENLVQSGIGPSQIAGAASHPPPPPAPPAPPPKPSSGNNGLRRMGSGSSNNARIGSSRRPVAWPPVAVRSSAS
GSRPSSPRSLADSEGYNSADEQGPCYASNYYDSERERMFEHDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTE
GFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSYHHGNHYNSVVDPRGLTVGAGLGFSSLRGTNNVDRDQVKAA
IKAQQDQQIENALLAEGRLYSDLELTEKEIERMVMEASRAEYLKQQQQQLNFRESSTSGAEPSSSAAISGSSRSAGTADRVGEECFVLPDTVLTRSMQLL
LAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGASAGGSNRRKGKAAE

GO Analysis
1
GO Category Molecular Function
GO Term chromatin binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Biological Process
GO Term cellular component organization
7
GO Category Biological Process
GO Term protein modification process
8
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants YES