LOC_Os04g33740

Expression Profile

RGAP LOCUS ID LOC_Os04g33740
RAP-DB ID Os04g0413500
Function glycosyl hydrolases, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Vacuole
score 0.967

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.87
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GIF1|OsCIN2|OsGIF1|WB1
Function assigned as per literature OsGIF1 plays important roles in vegetative and reproductive developmental processes, with important implications for rice breeding
Subcellular localization as per literature Nucleus
Cells used for localization experiment  rice protoplast cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29051769
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01730/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.117
NLS score 0.76
Protein Sequence >LOC_Os04g33740.1 protein
MGVLGSRVAWAWLVQLLLLQQLAGASHVVYDDLELQAAATTADGVPPSIVDSELRTGYHFQPPKNWINGNAPMYYKGWYHLFYQYNPKGAVWGNIVWAHS
VSRDLINWVALKPAIEPSIRADKYGCWSGSATMMADGTPVIMYTGVNRPDVNYQVQNVALPRNGSDPLLREWVKPGHNPVIVPEGGINATQFRDPTTAWR
GADGHWRLLVGSLAGQSRGVAYVYRSRDFRRWTRAAQPLHSAPTGMWECPDFYPVTADGRREGVDTSSAVVDAAASARVKYVLKNSLDLRRYDYYTVGTY
DRKAERYVPDDPAGDEHHIRYDYGNFYASKTFYDPAKRRRILWGWANESDTAADDVAKGWAGIQAIPRKVWLDPSGKQLLQWPIEEVERLRGKWPVILKD
RVVKPGEHVEVTGLQTAQADVEVSFEVGSLEAAERLDPAMAYDAQRLCSARGADARGGVGPFGLWVLASAGLEEKTAVFFRVFRPAARGGGAGKPVVLMC
TDPTKSSRNPNMYQPTFAGFVDTDITNGKISLRSLIDRSVVESFGAGGKACILSRVYPSLAIGKNARLYVFNNGKAEIKVSQLTAWEMKKPVMMNGA

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Biological Process
GO Term carbohydrate metabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cell wall
6
GO Category Biological Process
GO Term transport
Presence of Splice variants No