LOC_Os04g33200

Expression Profile

RGAP LOCUS ID LOC_Os04g33200
RAP-DB ID Os04g0404900
Function heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 4.659

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Cytoplasm
score 35
confidence value 0.03
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RIF1
Function assigned as per literature RIF1 interacts with RF2 which is a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26224552
Reference of localization https://link.springer.com/article/10.1186/s12284-014-0021-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.092
NLS score -0.47
Protein Sequence >LOC_Os04g33200.1 protein
MGGSYELVRTDDAAGHVLDLEAGRCAAVYPKGGGGGGGIAPPPVPSPPSSPASARQRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVM
PFFLFIVGVALALAYKRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDMEKIRLMGILQRIAIAYIVTALCEIWLKGDDDVDSGFDLLKR
NRYQLFIGLIVMITYMGFLYGTYVPDWEYRISVPGSTEKSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPVYARSKQCSINSPQNGPLRPDAPSW
CQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQKHKERIMKWLIPSFSMLILAFSLDFFGMHMNKPLYTVSYALATAGAAGLLFAGIYALVDMYGHRRP
TAVMEWMGTHALMIYVLIACNILPIFIHGFYWREPKNNLLRLIGVGA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES