LOC_Os04g32930

Expression Profile

RGAP LOCUS ID LOC_Os04g32930
RAP-DB ID Os04g0401800
Function DNA cross-link repair 1A protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 1.405

3) NUCPRED Prediction
localization Non Nuclear
score 0.53

4) Y-Loc Prediction
localization Nuclear
score 99.93
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSnm1
Function assigned as per literature OsSnm1 is involved in the repair of DNA interstrand crosslinks, and in various other DNA repair pathways.
Subcellular localization as per literature nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 15737637
Reference of localization https://www.sciencedirect.com/science/article/pii/S0006291X05001890?via%3Dihub#fig6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.121
NLS score 1.09
Protein Sequence >LOC_Os04g32930.1 protein
MGTDIAGDGEPSSPPPLPVPDGLDDNGFPLPSSPTAATAATSFADDFYRSGTDWSSLLAAPSPPPSSEESGKNKSGDSLVQRSLFQAWGIDRRPRREEEV
AGVAGGAGAGASSAPSGSWPGRKRRRGGEVEAAADRKPLACPFYKKIPGTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGGLTKKWCHGPIYCTALTARLV
KMCLSVNPEYICPLELDKEYVIEGVSVTLLEANHCPGAALIHFRLGDGKKYLHTGDFRASKSMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFA
VRTAKRYLQKEPKTLIVVGAYSIGKENVYLAISKALQVPIYTDASRRRILHAFGWSDLSKMICSDSQSSSLHVLPLSSLRHENLQKYLETLKQRFLAVLA
FRPTGWTFSEETGNQLDLIKPSSRGKITIYGVPYSEHSSFSELREFVMFLRPQKVIPTVNVGNAASRDKMQAHFREWLKGL

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No