LOC_Os04g31320

Expression Profile

RGAP LOCUS ID LOC_Os04g31320
RAP-DB ID Os04g0382100
Function SWIB/MDM2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 2.132

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 96.06
confidence value 0.53
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SWI/SNF-BAF60b

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSWIB
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.143
NLS score 0.53
Protein Sequence >LOC_Os04g31320.1 protein
MLPPASPPAVRQCLSFTSHRIAACRREAPLMKGESEEEETAAAAAAAVGANSAGGVDLTPAAARRNKKRKLPEKQLPDRVAALLPESALYTQLLEFESRV
DAALHRKKVDIQEALKSPPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLKIIGRVLEDGAELDPASVVPKHNPVYPKFSSFFKRVTIALDPSLYP
ENPLIIWENARSAAPQEGFEVKRKGDKEFSANIRLEMNYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFGEDK
LRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHASACYDVIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEF
INALIASQSKDLKLIAGEANRNIERERRADFYNQPWVEDAVIRYLNRKPASGNEGPGGGAGGS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No