LOC_Os04g28280

Expression Profile

RGAP LOCUS ID LOC_Os04g28280
RAP-DB ID Os04g0350700
Function BEE 3, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 4.356

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 99.91
confidence value 0.7
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) An-1
Function assigned as per literature Regulates awn development, grain size, and grain number in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24076974
Reference of localization http://www.plantcell.org/content/plantcell/suppl/2013/11/20/tpc.113.113589.DC1/tpc113589Supplemental.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.103
NLS score 0.76
Protein Sequence >LOC_Os04g28280.1 protein
MNPTTAAAADQPSKPSAAAAARKRKSSAKPKASSSSLPTATATTNASPKRSKVAAGAGDDGDADADAAEEKPEPAKDYIHVRARRGQATDSHSLAERVRR
ERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEFLSMKLATMNPQLDFDSHYMPSKDMSHMPVPAYPSSDPTTTTAFSYTGSPATADPFTV
YNCWELDLHTAMQMGATTGLSQDGPIATMAPSPSPLPHHPPLHGFYGGQQQQGTTVNHMKAEP

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No