LOC_Os04g27790

Expression Profile

RGAP LOCUS ID LOC_Os04g27790
RAP-DB ID Os04g0345400
Function terpene synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 6

2) CELLO Prediction
localization Nuclear
score 1.182

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Chloroplast
score 1
confidence value 0.96
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTPS24
Function assigned as per literature OsTPS24 encodes a jasmonate-responsive monoterpene synthase that produces an antibacterial γ-terpinene against rice pathogen
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26771167
Reference of localization https://www.sciencedirect.com/science/article/pii/S0176161715002771
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os04g27790.1 protein
MQIVSNMGSAGKCAPSLAPTHIGLGMMGKIAVSPSSVRPRPRAMASHDAIAPEKTTNYEPSVWGDFFINYRPQPLQRSEEWMRQRAKRLKMNVRTLFWTS
NDVVVRMNLVDAVQRLGIGHLFKDEIRRTLNDIHQSEFTSSSLHEVALRFRLLREHGLWVSPVTFNKFKGDDGRFMNGIADEPRGLLSLYNAAYLLVHDE
PELEEAISFSRYHLKSMMQGNNLKHPLSDQVKRALNTPLPRTSKRTETLHYLSEYGQEEGHMSILLDLAKVEFNLLQGVHLKELKAISEWWRDLNEHVEL
SYLRDRVVESYTCSHMLFYEEGLAFTRITFTKIIVLIIMMDDTYDSHATIQECRKLNEAIQRWNESAVSVLPEYLKNFYHKLLNNFKEFENQVVVSEKYR
VAHAKKEFQILSHYFLQEAEWSHNNYKPSFEEQLALSTKTSTVQLLCVSTTVGRGDAITNEAFMWAASSTTVTSCAKIMRFMNDIASFERGKNKGEIAST
VECYMNEHNIISEVAFAKLDSLVEDEWRTINQARCEHHQLLPVVQRVVNLAICIMFFYDKRKDAYTFSTHLQEIVRNLFINPITM

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No