LOC_Os04g27190

Expression Profile

RGAP LOCUS ID LOC_Os04g27190
RAP-DB ID Os04g0340300
Function terpene synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Cytoplasmic
score 2.107

3) NUCPRED Prediction
localization Non Nuclear
score 0.16

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.87
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTPS19
Function assigned as per literature OsTPS19 was determined to function as an (S)-limonene synthase in rice and plays a role in defence against M. oryzae, at least partly, by inhibiting spore germination.
Subcellular localization as per literature Plastids
Cells used for localization experiment Root cells of transgenic rice
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29509987
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/pbi.12914
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os04g27190.1 protein
MSTSIPLPFFFSHGVVHARIGHRPIQPSVGLLSAGAPAKVSFRRQSSAHRHAAHVVSSESITPVKEVSSFEPSVWGDFFINYDPKPLQRSEDWMMEKADK
LKQDVRILFETHNDTAKKMHLVDAVQRLGIDHLFQDEINNAISDIKESEFTSSSLHEVALHFRLLREHGIWVSPDVFEKFKGEDGRFINTIADEPRALLS
LYNAAHLLVHDEPELEEAMSFARHHLESMRDGSRLKAPLDNQINRALHLPLPRTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFS
QWWKDLYGYVELSHVRDRAVESYLWSYALFYEENLTLTRMILAKIIVFIVLMDDTYDDHATIEECRKLNEAIQRWDESAISLLPEYMKKFYRALLNYFRE
TEAQVEASDKYRVTCMKKEFQNLSTYYLQEFEWLHQNYKPAFKERVALSTLSSTVPLLCVTAAVGQGDAVTKESFELTTVRSSAVIACAKIMRFMNDIAA
FKSGRKNKGDAANTVECYINEHKVTSEVALDKIESMIESEWRTLNQVRCDHQKQFHVVQRVMNLAVAVPFFYDKKKDAYTFSKYHQGNVGNLFVNPVTL

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants YES