| RGAP LOCUS ID |
LOC_Os04g20270 |
| RAP-DB ID |
Os04g0271000 |
| Function |
transcriptional regulator Sir2 family protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
8.5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.923 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.35 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
52 |
| confidence value |
0.52 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSRT1 |
| Function assigned as per literature |
OsSRT1 induces DNA fragmentation and cell death in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17468215 |
| Reference of localization |
http://www.plantphysiol.org/content/plantphysiol/144/3/1508.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.145 |
| NLS score |
0.33 |
| Protein Sequence |
>LOC_Os04g20270.1 protein
MSLGYAEKLSYREDVGNVGMPEIFDSPELLHKKIEELAVMVRESKHLVVFTGAGISTSSGIPDFRGPKGVWTLQRSGKGVPGASLPFHRAVPTLTHMALV
ELEKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEYLRDFEIETIGLKDTPRRCSDKNCGARLKDTVLDWEDALPPEEMDAAKEQCQ
KADLVLCLGTSLQITPACNMPLLSLKNGGRVAIVNLQATPKDKKASLVIHGLVDKVIAGVMYMMNLRIPPYIRTDFVQISLRNSVKKKCVRWTLRVTSIH
GLRAPLPFLRSVEVSFPERPDMKPVVLKEQPFSLQRETSMNRPFVMLLTFNFSDGCGCSSSSIEWPVDFLKQKDSFVRDRSLVLQELQHAAEHRSRAGQH
AILEREGVPRAETSIHALVTNIVRYDTEDSKAAVPMATWMNSNGSLSKRHMDAIGCNPASSKKQKLVATRHRRKGLNPATQKV |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
regulation of gene expression, epigenetic |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| Presence of Splice variants |
YES |
