| RGAP LOCUS ID |
LOC_Os04g16970 |
| RAP-DB ID |
Os04g0243700 |
| Function |
zinc finger, C3HC4 type domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.045 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.05 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.32 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCTR1 |
| Function assigned as per literature |
OsCTR1 confers drought tolerance via ABA-dependent regulation and related systems |
| Subcellular localization as per literature |
Cytoplasm and chloroplast |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24215658 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/pce.12219 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.13 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g16970.1 protein
MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRDCVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLA
EDMVIWFSAMLVPGF |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| Presence of Splice variants |
No |
