| RGAP LOCUS ID |
LOC_Os04g15920 |
| RAP-DB ID |
Os04g0229100 |
| Function |
dehydrogenase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
3.087 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
99 |
| confidence value |
0.97 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
RIF3 |
| Function assigned as per literature |
RIF3 interacts with RF2 which is a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice |
| Subcellular localization as per literature |
Cytoplasm |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26224552 |
| Reference of localization |
https://link.springer.com/article/10.1186/s12284-014-0021-6 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.106 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os04g15920.1 protein
MEVTPNHTQTVSGWAAMDESGKIVPFVFKRRENGVDDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTKVGTNVAGFKVGDRVGVGCIAAS
CLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVA
VKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVS
GSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINVGGDSKL |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
secondary metabolic process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| Presence of Splice variants |
No |
