LOC_Os04g11830

Expression Profile

RGAP LOCUS ID LOC_Os04g11830
RAP-DB ID Os04g0194600
Function TCP family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.528

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.52
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category TCP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PCF1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.082
NLS score 0.21
Protein Sequence >LOC_Os04g11830.1 protein
MMASSSDLILYNLVPAQPLNPSAIPNPNPDLSIAAAEPPSSDGATPRRVRPRKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWL
LRQAEPSIIAATGTGVTPEEAPPAAVAIGSSSVAAAAAAGGHGGAFVHVPYYTALLMQPPNADEPPMASAASASGTTAADENNN

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No