LOC_Os04g08450

Expression Profile

RGAP LOCUS ID LOC_Os04g08450
RAP-DB ID Os04g0166600
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Nuclear
score 2.01

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Nuclear
score 71.5
confidence value 0.23
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSFL1
Function assigned as per literature OsSFL1 mediated periodic histone deacetylation on the rhythmically altered photoperiodic gene Hd1 to specifically dampen the expression of its downstream gene Hd3a under SDs
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31446676
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13235
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.135
NLS score -0.47
Protein Sequence >LOC_Os04g08450.3 protein
MMMETELCSSRVLSPPRYESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEPPTGNEDDDDIDGNNS
FCSSSDMGDKDMDYLASIEYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNLTKLGTPTLWRYWKHFNLVSMNPNPSKEQLFHGVQQHFQSQQL
DELQVILGFIQAAKRLKTLYRS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES