| RGAP LOCUS ID |
LOC_Os04g08350 |
| RAP-DB ID |
Os04g0165700 |
| Function |
cysteine synthase, chloroplast/chromoplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.769 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.09 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.73 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCAS |
| Function assigned as per literature |
OsCAS mainly functions in cyanide detoxification. |
| Subcellular localization as per literature |
Mitochondria |
| Cells used for localization experiment |
root tip cells of transgenic Arabidopsis |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
19181864 |
| Reference of localization |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652057/pdf/ern343.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.112 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g08350.1 protein
MERALMSLMRRRSLLQSGGRAPPAMAAAAGGSPFFSTLQQAAAADPVQSPGILPGLKIRDSASQLIGRTPMVYLNKVTEGCGARIAAKLEFLQPSFSVKD
RPAISMLEDAEKKGLITPGKTTLIEPTSGNMGIGLAFMAALKGYELILTMPSYTSLERRVTMRAFGAKLVLTDPTKGMGGTVRKAAELYENHPSAFMLQQ
FENPANVKVHYETTGPEIWEDTLGQVDIFVMGIGSGGTVTGVGKYLKEKNPNAKIYGVEPAEANVLNGGKPGPHLITGNGVGFKPEILNMDIMEKVIEVK
GEDAVKMARELALKEGLLVGISSGANTVAALELAKKPENKGKLIVPMRLFFQTVLPSLGERYLSSALFEELRAEAEAMQPVPVD |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 12 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
