LOC_Os04g04330

Expression Profile

RGAP LOCUS ID LOC_Os04g04330
RAP-DB ID Os04g0132500
Function receptor-like protein kinase 2 precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Extracellular
score 1.308

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.27
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CTB4a
Function assigned as per literature CTB4a confers cold tolerance
Subcellular localization as per literature Cell surface and chloroplasts
Cells used for localization experiment Rice leaf sheath cells and tobacco leaf cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28332574
Reference of localization https://www.nature.com/articles/ncomms14788#s1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.073
NLS score -0.16
Protein Sequence >LOC_Os04g04330.1 protein
MQLPLPPLLPSPMHFLLLLLHLLSFSSSTAASASSEVAFLTQWLNTTAARPPDWSPSASSPCKWSHVGCDAATGSVTSVTFQSVHLAAPLPPGICAALPS
LASLVVSDANLTGGVPDDLHLCRRLAVLDLSGNSLSGPIPASLGNATAMASLALNSNQLSGPIPASLGNLAASLRDLLLFDNRLSGELPASLGELRLLES
LRAGGNRDLGGEIPESFSRLSNLVVLGLADTKISGALPASLGRLQSLQTLSIYTTMLSGSIPAELAGCGNLTNVYLYENSLSGPLPPSLGALPRLQKLLL
WQNSLTGPIPDTFGNLTSLVSLDLSINAISGAIPASLGRLPALQDLMLSDNNLTGTIPPALANATSLVQLQLDTNAISGLIPPELGRLAALQVVFAWQNQ
LEGSIPASLAGLANLQALDLSHNHLTGAIPPGIFLLRNLTKLLLLSNDLSGVIPPEIGKAASLVRLRLGGNRLAGTIPAAVAGMRSINFLDLGSNRLAGG
VPAELGNCSQLQMLDLSNNTLTGALPESLAGVRGLQEIDVSHNQLTGGVPDAFGRLEALSRLVLSGNSLSGAIPAALGKCRNLELLDLSDNALSGRIPDE
LCAIDGLDIALNLSRNGLTGPIPARISALSKLSVLDLSYNALDGGLAPLAGLDNLVTLNVSNNNFTGYLPDTKLFRQLSTSCLAGNSGLCTKGGDVCFVS
IDASGRPVMSADEEEVQRMHRLKLAIALLVTATVAMVLGMVGILRARGMGIVGGKGGHGGGSSDSESGGDLAWPWQFTPFQKLSFSVEQVVRNLVDANII
GKGCSGVVYRVGLDTGEVIAVKKLWPSTRNGADKDDVAGGGRVRDSFSAEVRTLGCIRHKNIVRFLGCCWNKTTRLLMYDYMANGSLGAVLHERRHGGHG
GGGAQLEWDVRYRIVLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLDFEAYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSY
GVVVLEVLTGKQPIDPTIPDGQHVVDWVRRRKGAADVLDPALRGRSDAEVDEMLQVMGVALLCVAPSPDDRPAMKDVAAMLNEIRLDRDDYANVDLLLKS
GAAAASPPRAAAAATSTSSSTPPSSSSFSGSSAMIYNSSSKAKSPFD

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term kinase activity
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES