LOC_Os04g02110
| RGAP LOCUS ID | LOC_Os04g02110 | ||||
| RAP-DB ID | Os04g0111900 | ||||
| Function | disease resistance protein RGA3, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | cyto | ||||
| score | 8 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 1.313 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.59 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.3 | ||||
| Number Of Software Predicting Nucleus | 1 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | RGA3 | ||||
| Function assigned as per literature | |||||
| Subcellular localization as per literature | NA | ||||
| Cells used for localization experiment | |||||
| NUCLEAR or Not Nuclear | |||||
| PMID | |||||
| Reference of localization | |||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.102 | ||||
| NLS score | 0.15 | ||||
| Protein Sequence | >LOC_Os04g02110.1 protein MALPSRRWAGAVESGVDPVAEAWAKLLRSLSQAMARLRVQMESFDDAQMRWALAAGVRAKAQLLASRLAQILALFWDEGQRAALPACVRDALYGMEDMVD DLEYHMLKFQPHQQEVRCNLLISLVNLRYRLIISHASRSRFLKDLDFVASEAGSLLSAMHKLEPTAPSLPALLLADDDHQVVFGRHKEVTDIVRILIDPP ASHHHHPTYDILPIVGMGGVGKTTLAKLVYDDAKVKQHFELRLWASVSTSGGFHKIDITEQILRSANPTYPASIHSEPTLDMLQFHLSQLVASKRFLLVL DDIREESFTSMACQEILSPLSSAEKGSRILVTTTTASVPAMLGASCTYHLNVLDIEDLWSLLKKYAFHGGPTHDSTQELEEIGRNIASKLKGLPLAAKML GGLLGATKSTKTWMNVLDKELYGDSILPVLELSYSYLPRRLKQCFSFCSLFPRNYKFNKRVLIQLWMAQGFVQSQNSADKNMEDLAEDYFEELLSRSFFD VRREACETHYVMHDLVHDLAQSVSADQCLRVEHGMISEKPSTARYVSVTQDGLQGLGSFCKPENLRTLIVLRSFIFSSSCFQDEFFRKIRNLRVLDLSCS NFVQLPNSIGELVHLRYLSLPRTLNMLPESVSKLLHLESLCFHKCSLEKLPAGITMLVNLRHLNIATRFIAQVSGIGRLVNLQGSVEFHVKKGVGCTLEE LKGLKDLRGKLKIKGLDNVLSKEAASKAELYKKRHLRELSLEWNSASRNLVLDADAIILENLQPPSSLEVLNINRYQGAICPSWLQLSSLKQLQSLDLIN CRNLEILPPLGLLPSLKYLCMKELCTVNQIGHEFYGDDDVPFPSLIMLVFDDFPSLFDWSGEVKGNPFPHLQKLTLIDCPNLVQVPPLPPSVSDVTMERT ALISYLRLARLSSPRSDMLTLDVRNISILCWGLFHQLHLESVISLKIEGRETPFATKGLCSFTSLQRLQLCQFDLTDNTLSGTLYALPSLCSLEMIDLPN ITSLSVPSDIDFFPKLAELYICNCLLFASLDSLHIFISLKRLVIERCPKLTAGSFPANFKNLTSLKVLSISHCKDFQSFPVGSVPPSLEALHLVGCHQS |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||