LOC_Os03g62650
| RGAP LOCUS ID | LOC_Os03g62650 |
| RAP-DB ID | Os03g0843600 |
| Function | ion channel DMI1-like, chloroplast precursor, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | plas |
| score | 10 |
2) CELLO Prediction |
|
| localization | PlasmaMembrane |
| score | 1.749 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.65 |
4) Y-Loc Prediction |
|
| localization | Chloroplast |
| score | 9 |
| confidence value | 0.72 |
| Number Of Software Predicting Nucleus | 0 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | Os-CASTOR |
| Function assigned as per literature | |
| Subcellular localization as per literature | NA |
| Cells used for localization experiment | |
| NUCLEAR or Not Nuclear | |
| PMID | |
| Reference of localization | |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 1 |
| Number of PAT7 | 3 |
| Number of Bipartite | 0 |
| Basic residues % | 0.11 |
| NLS score | 0.81 |
| Protein Sequence | >LOC_Os03g62650.1 protein MPLDPDSSPAPPHRDWFFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRRRDPRYAGVRRGD VRTLTAEKAAAAAAVPTAAQVHGSKSAASATTLRWSGMVSVAAIVLCFSSLVRSNSSLHDQVHHLKAQLAEATTKLQSCITESSMDMSSILSYQSNNSTS QNRGLKNFSLLLSLSTLYAPLLILKYMDLFLKLRSSQDSEEEVPINKRLAYRVDIFLSLQPYAKPLVLLVATLLLIGLGGLALYGVNDDSLLDCLWLSWT FVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQSHTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKDKEE MEADIAKMEFDLKGTAIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVV AHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIAEDDDTYAPAP LPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRERKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLESFD SILILADESVEDSAIQADSRSLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKNLLSVSKISDYVLSNELVSMA LAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE |
GO Analysis |
|
| Presence of Splice variants | YES |