LOC_Os03g61930

Expression Profile

RGAP LOCUS ID LOC_Os03g61930
RAP-DB ID Os03g0835600
Function ACBP4, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Cytoplasmic
score 2.291

3) NUCPRED Prediction
localization Non Nuclear
score 0.16

4) Y-Loc Prediction
localization Cytoplasm
score 70
confidence value 0.18
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsACBP6
Function assigned as per literature OsACBP6 has role in in peroxisomal β-oxidation, and suggest that rice ACBPs are involved in lipid degradation in addition to lipid biosynthesis.
Subcellular localization as per literature Peroxisomes
Cells used for localization experiment rice sheath cells.
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24738983
Reference of localization https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.12809
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os03g61930.1 protein
MASSGLAYPDRFYAAAAYAGFGAGGATSSSAISRFQNDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHGLGSMPSAEAMRLFVKILEEEDPGW
YSRVPEFNPEPVVDIEMHKPKEDPKVILASTNGTSVPEPKTISENGSSVETQDKVVILEGLSAVSVHEEWTPLSVNGQRPKPRYEHGATVVQDKMYIFGG
NHNGRYLSDLQALDLKSLTWSKIDAKFQAGSTDSSKSAQVSSCAGHSLISWGNKFFSVAGHTKDPSENITVKEFDPHTCTWSIVKTYGKPPVSRGGQSVT
LVGTTLVLFGGEDAKRCLLNDLHILDLETMTWDDVDAIGTPPPRSDHAAACHADRYLLIFGGGSHATCFNDLHVLDLQTMEWSRPKQQGLAPSPRAGHAG
ATVGENWYIVGGGNNKSGVSETLVLNMSTLTWSVVSSVEGRVPLASEGMTLVHSNYNGDDYLISFGGYNGRYSNEVFALKLTLKSDLQSKTKEHASDGTS
SVLEPEVELSHDGKIREIAMDSADSDLKKDDANELLVALKAEKEELEAALNREQVQTIQLKEEIAEAEARNAELTKELQTVRGQLAAEQSRCFKLEVDVA
ELRQKLQSMDALEREVELLRRQKAASEQAALEAKQRQSSSGMWGWLVGTPPDKSES

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Molecular Function
GO Term lipid binding
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES