LOC_Os03g61760

Expression Profile

RGAP LOCUS ID LOC_Os03g61760
RAP-DB ID Os03g0833300
Function OsSPL6 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 1.989

3) NUCPRED Prediction
localization Non Nuclear
score 0.54

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPL6
Function assigned as per literature OsSPL6 represses signalling outputs of ER stress in control of panicle cell death in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Epidermal cells of the coleoptile detached from the rice transgenic seedlings
NUCLEAR or Not Nuclear NUCLEAR
PMID 29632394
Reference of localization https://www.nature.com/articles/s41477-018-0131-z
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.1
NLS score 1.48
Protein Sequence >LOC_Os03g61760.1 protein
MEAARVGAQSRHLYGGGLGEPDMDRRDKRLFGWDLNDWRWDSDRFVATPVPAAEASGLALNSSPSSSEEAGAASVRNVNARGDSDKRKRVVVIDDDDVED
DELVENGGGSLSLRIGGDAVAHGAGVGGGADEEDRNGKKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFH
PLQEFDEGKRSCRRRLAGHNRRRRKTRPEVAVGGSAFTEDKISSYLLLGLLGVCANLNADNAEHLRGQELISGLLRNLGAVAKSLDPKELCKLLEACQSM
QDGSNAGTSETANALVNTAVAEAAGPSNSKMPFVNGDQCGLASSSVVPVQSKSPTVATPDPPACKFKDFDLNDTYGGMEGFEDGYEGSPTPAFKTTDSPN
CPSWMHQDSTQSPPQTSGNSDSTSAQSLSSSNGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESYIRPGCIILTVYLRLVESAWKELSD
NMSSYLDKLLNSSTGNFWASGLVFVMVRHQIAFMHNGQLMLDRPLANSAHHYCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLICSFEGSCIFQEDTD
NIVDDVEHDDIEYLNFCCPLPSSRGRGFVEVEDGGFSNGFFPFIIAEQDICSEVCELESIFESSSHEQADDDNARNQALEFLNELGWLLHRANIISKQDK
VPLASFNIWRFRNLGIFAMEREWCAVTKLLLDFLFTGLVDIGSQSPEEVVLSENLLHAAVRMKSAQMVRFLLGYKPNESLKRTAETFLFRPDAQGPSKFT
PLHIAAATDDAEDVLDALTNDPGLVGINTWRNARDGAGFTPEDYARQRGNDAYLNMVEKKINKHLGKGHVVLGVPSSIHPVITDGVKPGEVSLEIGMTVP
PPAPSCNACSRQALMYPNSTARTFLYRPAMLTVMGIAVICVCVGLLLHTCPKVYAAPTFRWELLERGPM

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No