LOC_Os03g61750

Expression Profile

RGAP LOCUS ID LOC_Os03g61750
RAP-DB ID Os03g0833200
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6.5

2) CELLO Prediction
localization Nuclear
score 2.008

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Nuclear
score 44.87
confidence value 0.08
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTRM13
Function assigned as per literature OsTRM13 positively regulates salt stress tolerance in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 28369540
Reference of localization https://academic.oup.com/jxb/article/68/7/1479/3091893
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.14
NLS score 0.83
Protein Sequence >LOC_Os03g61750.1 protein
MGRAPAKRKPSSPPPPPPPGRCHFWLPNKRRHCANTPLPTSQYCGNHLPDSASDAGAPFRRLVPCPVDPSHTVLEENLEAHVGKCPLKKQAAALAAQPFY
SKGINSGGGEGGGGVTSAAKRALVHKLTKDELRALIEKIKLAHASAAMAMRDSFLVTDACDNWMRNQVDRKVPYQEKHVTQQASIIGNMEAFGLLQKGGE
VAEENGVKNAPAVVEFGAGRGYLTQMLADCYGIRNVFLVERRSYKLKLKI

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No