LOC_Os03g61130

Expression Profile

RGAP LOCUS ID LOC_Os03g61130
RAP-DB ID Os03g0826600
Function phosphoesterase family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Mitochondrial
score 1.506

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNPC1
Function assigned as per literature NPC1 modulates silicon distribution and secondary cell wall deposition in nodes and grains and affects mechanical strength and seed shattering
Subcellular localization as per literature Plasma and intracellular membrane
Cells used for localization experiment Rice leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26991499
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.13165
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.11
NLS score 1.15
Protein Sequence >LOC_Os03g61130.1 protein
MAGGGGRERRGGGRLLVGVLLLTLVVSGHCLESTHHRGLKRRRRKHEIHSPIKTVVVVVMENRSFDHILGWLSRTRPDIDGLNGTQSNRLNASDPSSPEI
FVTDEAGYVDSDPGHGFEDIREQIFGSADTSAVPAPMSGFAQNARGMGLGMPQNVMSGFKPESVPVYAALADEFAVFDRWFASVPTSTQPNRLYVHSATS
HGLTFNARKDLIHGFPQKTIFDSLEENGLSFGIYYQNIPATLFYQSLRRLKHLVKFHQYSLKFKLHAKWGKLPNYAVIEQRYFDCEMFPANDDHPSHDVA
RGQRFVKEVYETLRASPQWNETALIITYDEHGGFYDHVPTPVVGVPQPDGIVGPDPYYFKFDRLGVRVPSFLISPWIEKRTVIHEPNGPQDSSQYEHSSI
PATVKKLFNLHSNFLTKRDAWAGTFENYFKIRKTPRTDCPEKLPEVTKSLQPFGPKEDSSLSEFQVELIQLASQLNGDHVLNTYPDIGRTMTVGEANRYA
EDAVARFLEAGRIALRAGANESALVTMRPALTSRASPSSDLSSEL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No