LOC_Os03g60910

Expression Profile

RGAP LOCUS ID LOC_Os03g60910
RAP-DB ID Os03g0824100
Function PPR repeat domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 1.467

3) NUCPRED Prediction
localization Non Nuclear
score 0.16

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.72
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OspTAC2
Function assigned as per literature OspTAC2 plays a critical role in chloroplast development and indicate that the molecular function of the OspTAC2 gene is conserved in rice and Arabidopsis.
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27760723
Reference of localization https://www.sciencedirect.com/science/article/pii/S1673852716301382?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score -0.47
Protein Sequence >LOC_Os03g60910.1 protein
MVDAPMALVSTTATVASPSYHYCDLLFPPARRWCCRARRRGGGGGRVAVVAARAPREAAAAAVVVENGGHSYEVESLIDRLSNLPPRGSIARCLETARHR
LTLQDFAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSESRTALSYTSLIAAYARNALHEEARELLDQM
KASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAG
NLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPPDTATYNVLFRVF
GDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNA
LANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSMVTVPS
IIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQALK
YGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDEDLPQLASVVVLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFHYPKWNKGRIIC
LKSQLKKLQAAIDSSNGAAISGFVPMTNSHLPSPGSKLYTRESQADNGSAHLTDETLVEEKESELLAL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Cellular comBiological Processonent
GO Term intracellular
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants No