LOC_Os03g60650

Expression Profile

RGAP LOCUS ID LOC_Os03g60650
RAP-DB ID Os03g0821300
Function protein phosphatase 2C, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 1.263

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.23
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) XB15|PP2C
Function assigned as per literature Xb15 encodes a PP2C that negatively regulates the XA21-mediated innate immune response
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment  rice protoplast cell
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 18817453
Reference of localization http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0060231
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.102
NLS score 0.59
Protein Sequence >LOC_Os03g60650.1 protein
MGNSLACFCCGGGAGGRGGRHVAPAALPSDPAYDEGLGHSFCYVRPDKFVVPFSADDLVADAKAAAAAEGEATTFRAISGAALSANVSTPLSTSVLLLMP
EESSASATASSGFESSESFAAVPLQPVPRFSSGPISAPFSGGFMSGPLERGFQSGPLDAALLSGPLPGTATSGRMGGAVPALRRSLSHGGRRLRNFTRAL
LARTEKFQDSADLGSPDAAAAAVAACGGDPCGLQWAQGKAGEDRVHVVVSEERGWVFVGIYDGFNGPDATDFLVSNLYAAVHRELRGLLWDQREQNVQHD
QRPDQPGSAPSTTASDNQDQWGRRRRTRRSRPPRGADDDQRRWKCEWEQERDCSNLKPPTQQRLRCNSENDHVAVLKALTRALHRTEEAYLDIADKMVGE
FPELALMGSCVLAMLMKGEDMYIMNVGDSRAVLATMDSVDLEQISQGSFDGSVGDCPPCLSAVQLTSDHSTSVEEEVIRIRNEHPDDPSAISKDRVKGSL
KVTRAFGAGFLKQPKWNDALLEMFRIDYVGSSPYISCNPSLFHHKLSTRDRFLILSSDGLYQYFTNEEAVAQVEMFIATTPEGDPAQHLVEEVLFRAANK
AGMDFHELIEIPHGDRRRYHDDVSVIVISLEGRIWRSCV

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term protein modification process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Molecular Function
GO Term hydrolase activity
7
GO Category Cellular comBiological Processonent
GO Term plasma membrane
8
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No